Course Title: Principles of BIOLOGY I Course Name: BI 107 Semester: Fall 2012 Course CRN: Lecture Lab 21207

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1 BI 107, Fall 2012 p. 1 BIOLOGY 107 GRADING AND COURSE INFORMATION Course Title: Principles of BIOLOGY I Course Name: BI 107 Semester: Fall 2012 Course CRN: Lecture Lab Lecture Class Meets: Mondays & Wednesdays, 2:00 P.M. 3:15 P.M. in room SC 216 Laboratory Meets: Wednesdays, 3:25 PM 5:55 P.M in SC 211 and SC 215 I. Instructor Information Name: Vedham Karpakakunjaram, Ph.D. Office: SC 234N Biology Department Office: SC 234A Phone: Biology Department Phone: vedham.karpakakunjaram@montgomerycollege.edu Office Hours: Mon: 3:30 5:00 P.M Course Homepage: Access course information, Tues: 2:00 3:00 P.M. announcements and files via Blackboard. Wed: 1:30 2:00 P.M. Making use of the office hours is strongly encouraged for additional comprehension of the subject. With timely notice, different meeting times can be scheduled. Using Discussions in Blackboard for discussion of topics covered in lectures and lab exercises will also be productive. II. Course Description BI 107-Principles of Biology I, first in a two-semester sequence intended for natural science majors, covers the molecular and cellular basis of life, enzymes, photosynthesis, cellular respiration, genetics, reproduction and development. You must be enrolled in a lecture and a lab to receive credit for the course. III. Course Outcome Upon completion of this course a student will be able to: 1. Describe the basic principles of chemistry that are important to Biology and identify the structure and functions of macromolecules important to living things. 2. Identify basic cell types, cellular structures and describe their functions. 3. Describe the basic processes of cellular metabolism including cellular respiration and photosynthesis. 4. Differentiate the characteristics of mitotic and meiotic cell divisions and understand gamete formation. 5. Apply basic mechanisms of heredity to predict inheritance of traits. 6. Explain the cellular and molecular basis of inheritance. 7. Recognize how prokaryotic genes are regulated by operon systems. IV. Important Dates Classes begin: Sept 05, 2012 Last day to drop class without a grade: Sept 25, 2012 Last day to drop classes with a grade of W : Nov 25, 2012 Thanksgiving Break: Nov 21-25, 2012 Finals week: Dec 17-21, 2012 V. Required Texts and Supplies Campbell et al., 2011, Biology (Custom Edition for Montgomery College 2 nd edition) Lab Manual: BI 107 Laboratory Exercises, 5 th Edition. STUDENTS MUST USE A NEW COPY. Rust, T. G., 1983, A Guide to Biology Lab, 3 rd Edition. Calculator for simple calculations (graphing calculators are not required) Goggles and gloves for laboratory classes. VI. Examinations and Grading: A. Requirements / Hints for Success 1. Although I am more than willing to help you in any way possible, you are responsible for your own learning. Ultimately, your success will be determined largely by the choices you make regarding your approach to this course.

2 BI 107, Fall 2012 p Choose to attend class and complete quizzes and assignments! In order to successfully complete this course, you must attend all lectures and labs, take all lecture and lab exams and complete all quizzes and assignments (see Section V.B, Course Grade). Attendance will be monitored and absence from lecture or lab will affect your grade (see Section VI.A, Attendance). You are responsible for all material covered in lecture and lab meetings. 3. Choose to study! To successfully complete this course, you must read, prepare and study both before and after coming to lecture and lab. Do not wait until the night before an exam to cram in all of your studying! Give your brain the time it needs to think about and understand the key concepts! a. Lecture: My lectures will be largely visual-oriented and will draw information and examples outside the assigned textbook, also. Students are expected to pay attention to details and take notes during the lecture. Asking questions is HIGHLY encouraged and will prove beneficial to the students. The final exam will be cumulative and will be held during finals week. Study Questions will be available for each section of material covered in lecture, in Blackboard, before each lecture exam. Study questions are NOT exhaustive; there may be questions in the exams that may not directly relate to study questions, but will be a derivative which may demand some reasoning, analysis and critical thinking from students. Online quizzes and assignments will be based on topics covered in the lectures. You are responsible for obtaining copies of Study Questions from the Course Homepage. Other assessments: Quizzes and Assignments should be completed online within the deadline. No makeup quizzes will be allowed. Late submissions of assignments will incur penalty points (@ 2 pts per day after deadline is past). Discussion sessions (described below) may also be scheduled during few weeks. Discussion Participation 1. What is an Online Discussion? An online discussion is similar to an conversation with some important differences. An online discussion can involve the entire class. All messages stay posted in the discussion area for participants to read and reread at any time throughout the course. An online discussion may typically last for a week. If you are new to online discussions, you will find them as rigorous as any on-campus classroom discussion. The purpose of a discussion is dialogue as a means of learning. 2. Discussion Policies: In addition to the mandatory participation in discussion sessions (graded) described above, students are encouraged to use the discussion board to post any course-related question (subject-based and/or courserelated) whenever required. I would strongly urge other students to respond to these questions. Such volunteer responses by student mentors will be appropriately rewarded with a maximum of 10 bonus points for the entire semester. A mere response to questions will not be sufficient to earn the bonus points; but the responses should be of considerable quality and/or accurate in content. Response Times: I generally return assignments and discussions within one week after the deadline. However, I encourage students to chat or discuss with me on their assignments ahead of the deadline, if my input on the preliminary versions are required or if pointers are needed for timely completion. 3. Guidelines for Participating in an Online Discussion You are expected to read all posted messages! Respond to each other promptly. Use a person's name when you reply to a message. It helps to keep all of us oriented. It helps us to maintain a clearer sense of who is speaking and who is being spoken to. As we begin to associate names with tone and ideas, we come to know each other better. Change the subject line when you introduce a new topic. The value of this tip will become apparent as the number of messages grows. You have to respond to at least two other posts. Of these, at least one posting should have been before 11:59 PM on Wednesdays of the week of discussion activity.

3 BI 107, Fall 2012 p. 3 Reinforce each other's ideas with comments such as "Good Point" or "I agree" or "Thanks for the comments." (These comments won t add to your grade, but they are nice to hear!) Avoid angry or rude comments. The use of objectionable, sexist, or racist language is not acceptable. Use emoticons to communicate humor, e.g. :-) ;-) :-0 :-/ :-( and so on... Oh, and have fun! Discussion Participation Grading Rubric Criteria & Points Met the assignment requirements Contributed frequently and on time Made meaningful contributions to the discussion Was courteous to all Total Points: 5 Little or no contribution 0 points None of the assignment criteria were met. Did not post in the discussion. Did not post in the discussion. Messages did not show courtesy and respect. Some contribution 0.5 point Some of the assignment criteria were met. Posted messages only once during the week. Responses to peers consisted less meaningful contributions to the discussion, like I Agree. Messages showed courtesy and respect. Almost There! 1.5 points Most of the assignment criteria were met. Posted messages at two different times during the week. Responses to peers advanced the discussion with some thoughtful comments, questions, anecdotes, and/or references to the readings. NA Good Contributions 2 points All of the assignment criteria were met. Posted messages at three or more different times during the week. Responses to peers advanced the discussion by posing thoughtful comments, questions, anecdotes, and/or references to the readings. NA I will be moderating the discussion sessions with minimum possible participation. While I may initiate and lead the discussion, I would encourage the students to quickly learn to interact constructively, leading to effective learning habits. b. Lab: Review the laboratory exercises before coming to lab so that you are prepared for the activities and are able to use your lab time efficiently. I will frequently check your understanding of the day s material. You should complete all activities and questions in the lab manual. Lab exams will be based on the knowledge you acquire as you obtain results and make observations. There will be a short pre-lab quiz before each lab exercise. I will also grade the report pages in your lab manual on the day of each exam. 4. Choose to seek help! If you are struggling with this class or having problems understanding some material, seek help ASAP! I will be more than happy to assist you schedule an appointment and meet me, if you cannot make it during my office hours! Other sources of help include biology tutors in the Math/Science Center or even your own classmates! Study groups are an EXCELLENT way to learn! Alternately, you may post your questions (difficult-to-understand issues) in Discussions (in the course home page in Blackboard) and your classmates would give their input to help you out. I will participate in such discussions as appropriate, and as situation demands! Lecture exams will cover material from study questions, assigned readings, lectures and textbook chapters. Exams will consist of a combination of multiple-choice, short and essay questions. Quizzes will be announced in advance. Quizzes will be multiple-choice questions and will aim at training you to reason out and apply the concepts you learn in lectures, and will be comparable to questions in lecture exams. Assignments will demand students to explore external sources (usually, websites) to complete these exercises.

4 BI 107, Fall 2012 p. 4 B. Course Grade (The following grading policy is tentative and subject to change) Grades will be based on 1000 total points, broken down as follows: Lecture Exams (4 + 1 cumulative final) ~500 points Lecture Quiz/Assignment/Participation ~100 points Lab Exams ~270 points Lab Attendance ~10 points Quizzes (including pre-lab) and assignments ~120 points A = 90% or above; B = 80-89%; C = 70-79%; D = 60-69%; F = 59% and below. No curve or grade adjustment will be considered. C. Late Policy Assignments are to be submitted (preferably online Blackboard) at the beginning of class on the due date. Late assignments will not be accepted under any circumstances. VII. Missed Exams: Lecture exams that are missed can only be made up with my permission. Missed lab exams can be made up only with my prior permission and the permission of the instructor of the section with whom you take the exam. VERIFIABLE DOCUMENTATION of your reason for absence is required! If you miss a lab period, you may check with me to discuss the options to make up the lab on a different day. VIII. Classroom Behavior and Academic Dishonesty Out of respect for the instructor and for other students in the class, each student is obligated to arrive on time and to conduct themselves in a mature and non-disruptive manner during the instructional period. Cell phones, beepers, or any other potentially distracting electronic devices should be turned off during class time. In the unlikely event that a student s behavior is distracting the class, the instructor may ask that student(s) to leave the class. Please refer to the Student Code of Conduct for more information. Academic dishonesty will not be tolerated. Group study is encouraged, but your work must be your own. Exams and other assignments that have been copied from one another may result in no credit for those students involved. A student caught cheating on an exam will automatically receive an F in the course. Please refer to Student Code of Conduct in the MC Student Handbook or at for policies regarding academic dishonesty and misconduct. IX. Attendance Policy Attendance in the laboratory classes will be taken, and 10 points will be awarded for attending all lab classes. If you miss a lab and do not make it up, you will lose 2 points. After two unexcused absences in the laboratory, you will receive notification of my intent to drop you from the course. Should you receive such a notice, contact me immediately. X. Disability Support Services and Accommodations Any student who may need an accommodation due to a disability, please make an appointment to see me during my office hour. A letter from Disability Support Services (Rockville - CB122; G-SA175; or TP-SS120) authorizing your accommodations will be needed. Any student who may need assistance in the event of an emergency evacuation must identify to the Disability Support Services Office: guidelines for emergency evacuations for individuals with disabilities are found at: If you are a veteran or on active or reserve status and interested in information regarding opportunities, program and services, please visit and/or contact Joanna Starling at / SV103 or joanna.starling@montgomerycollege.edu XI.Tardiness Late arrival in lecture is disruptive to the class. Late arrival to the laboratory is even more disruptive since it affects your lab partners and causes you to miss essential lab instructions. Please plan your commute accordingly and allow plenty of time for parking. XII. Cancellation of Classes The only time the Biology Department cancels classes is when the college closes. The college reports its status to all of the major television and radio stations. Typically, the college only reports that it is closing or is closed, NOT that it is

5 BI 107, Fall 2012 p. 5 open. Use your own judgment if the weather is inclement and you have not heard a report from the college. Please contact me as soon as you can if you will miss a class. *CELL PHONES & EXAMS: Under no circumstances should you answer or use a cell phone during a quiz or exam. Cells phones should be put away and should not be visible. Failure to follow this policy will result in you receiving "0" points on the quiz or exam. *This policy also applies to other electronic devices such as dictionaries, translators, ipods, etc. For some exams, a simple calculator may be permitted. Principles of Biology I (BI 107): Tentative Lecture Schedule (MW Classes) DATE Week TOPIC TEXT CHAPTER 09/05/12 1 Introduction; The Chemical Context of Life 1, 2 09/10/12 The Chemical Context of Life; Carbon and the Molecular Diversity of Life 2, 4 09/11/12 2 Refund deadline 09/12/12 Carbon and the Molecular Diversity of Life; Water and Life 4, 3 09/17/12 The Structure and Function of Large Biological 3 09/19/12 Molecules 5 The Structure and Function of Large Biological 09/24/12 5, 6 Molecules; A Tour of the Cell 4 09/25/12 Last day to drop without a Grade 09/26/12 Cell Structural Organization: In-Class Activity 6 10/01/12 Exam1 (Chapters 1, 2, 3, 4, 5 and 6) 5 10/03/12 Membrane Structure and Function 7 10/08/12 An Introduction to Metabolism 6 10/10/12 Cellular Respiration 8, 9 10/15/12 Cellular Respiration 7 10/17/12 Photosynthesis 9, 10 10/22/12 Cell Cycle and Mitosis 8 10/24/12 Exam 2 (Chapters 7, 8, 9 and 10) 12, 16 10/29/12 10/31/12 9 The Molecular Basis of Inheritance 16 11/05/12 11/07/12 10 From Gene to Protein 17 11/12/12 11/14/12 11 Regulation of Gene Expression 18 11/19/12 Exam 3 (Chapters 12, 16, 17 and 18) 11/21/12-11/25/12 12 Thanksgiving week; No classes; College Closed 11/25/12 Last Day to drop with a W 11/26/12 Meiosis and Sexual Life Cycles 13 11/28/12 Mendel and the Gene Idea 13, 14 12/03/12 Mendel and the Gene Idea 14 12/05/12 The Chromosomal Basis of Inheritance 14, 15 12/10/12 The Chromosomal Basis of Inheritance /12/12 Exam 4 (Chapters 13, 14 and 15) 12/17/12 FINAL Exam 5 (Cumulative) 2:45 4:45PM Text: Campbell, N.A. et al., Biology, Custom Edition for Montgomery College 2 nd edition or the full 9 th edition

6 BI 107, Fall 2012 p. 6 Lab Schedule Room # Date Exercise # Topic SC /05/12 1 The Microscope Fundamentals of Light Microscopy SC211 09/12/12 4 *Diffusion & Osmosis SC /19/12 2 *Organic Molecules (carbohydrates, proteins, & lipids) SC211 09/26/12 3R *Enzymes, Factors Affecting Rate of Activity SC /03/12 5 Cell Respiration SC211 10/10/12 6 *Photosynthesis SC /17/12 -- Lab Exam I (Ex. 1, 2, 3R, 4, 5 & 6) SC211 10/24/12 7 **Mitotic Cell Division SC /31/12 8 & 14 *DNA Restriction (8: Part 1); DNA Purification (14: Expt. A) SC211 11/07/12 8 & 14 *DNA Electrophoresis (8: Part II); DNA Bacterial Transformation (14; Expt. B) SC /14/12 8 & 14 DNA lab Analysis SC211 11/28/12 11 **Plant Tissues SC /05/12 12R **Animal Tissues SC211 12/12/ Lab Exam II (Ex. 7, 8, 11, 12R & 14) *These exercises require safety goggles and/or gloves **These exercises will utilize photomicrographs found in the manual by Rust MATERIALS REQUIRED: 1. A Laboratory Manual for BI 107, 5 th ed. (to be purchased at MC Bookstore) 2. Rust, Thomas G A Guide to Biology Lab, 3 rd ed. (available at the bookstore) 3. Safety goggles & disposable gloves (available at the bookstore) 4. 3-ring binder for manual and handouts 5. Hard lead pencil (#3 or #4 for drawing) 6. A simple calculator NOTE We will be using Blackboard to complete quizzes and assignments. At least one graded online quiz will be scheduled before each lecture exam. Quizzes will primarily be in multiple-choice format and will be designed similar to multiplechoice questions that you may expect in your lecture exams. So, it will be a great opportunity for you to effectively learn for your exams.

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